E3SM on Docker

Pre-required

• docker

Get the Code

The E3SM code is available from Github.

We only support obtaining the code with “git clone“. You need at least version 2.0 or later of git.

For access to all code versions, add an ssh key to github. We will not be making .tar.gz or .zip files available at this time.

Open a terminal and issue the following commands: Pre-required

• Add an ssh key to github

Load the key into the ssh agent

ssh-add ./id_ed25519
ssh-add -l

cd ~/Documents

git clone -b <ref> --recursive https://github.com/E3SM-Project/E3SM.git
where <ref> is one of the following:
maint-1.0
maint-1.1
maint-1.2
maint-2.0
maint-2.1

mkdir -p $HOME/Documents/E3SM/cesm-inputdata

docker run -it \
--mount type=bind,source=$HOME/.ssh,target=/home/e3sm/.ssh \
--mount type=bind,source=$HOME/Documents/E3SM,target=/home/e3sm/Documents/E3SM \
--hostname singularity \
--shm-size=512m \
lukaszlacinski/e3sm:2021.03.19 /bin/su - e3sm

grep -rni “text string” .

./cime/config/e3sm/machines/userdefined_laptop_template/config_machines.xml

cd E3SM/cime/scripts/
 

Running with run_e3sm script

Instructions for E3SM v1.0

wget https://web.lcrc.anl.gov/public/e3sm/run_e3sm.DECKv1b_piControl.ne30_oEC.cori-knl.csh
chmod +x run_e3sm.DECKv1b_piControl.ne30_oEC.cori-knl.csh

If you want to keep all the default settings (a reasonable first choice), you can then simply execute it:

./run_e3sm.DECKv1b_piControl.ne30_oEC.cori-knl.csh

https://www.nersc.gov/users/accounts/allocations/first-allocation/

New Test

docker run -it \
--mount type=bind,source=$HOME/.ssh,target=/home/e3sm/.ssh \
--mount type=bind,source=$HOME/projects/e3sm,target=/home/e3sm/projects/e3sm \
--hostname singularity \
--shm-size=512m \
lukaszlacinski/e3sm:2021.03.19 /bin/su - e3sm

Reference List

1. https://acme-climate.atlassian.net/wiki/spaces/DOC/pages/2488401938/Docker+container